MolNFT v1 · #188124 · protein
Lysophosphatidic acid receptor 1-gi complex bound to lpa
7TD0: “Lysophosphatidic acid receptor 1-gi complex bound to lpa”. Electron microscopy, 1 ligand (NKP). MolNFT v1 #188124 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7TD0
- Type
- protein
- Length
- 903 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q92633, P62871, B2RSH2, P63212
- Ligands
- NKP
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| R | — | protein | 290 | — | Q92633 |
| B | — | protein | 339 | — | P62871 |
| A | — | protein | 218 | — | B2RSH2 |
| G | — | protein | 56 | — | P63212 |
Ligands and binding sites
- NKP · (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate · ligand · chains R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7TD0 · Lysophosphatidic acid receptor 1-Gi complex bound to LPA · the same entry in another collection · chain G against G, TM-score 1.00
- P62871 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(T)… · a predicted model of the same protein · chain B against A, TM-score 0.99
- Q92633 · AlphaFold monomer V2.0 prediction for lysophosphatidic acid receptor 1 (Q92633) · a predicted model of the same protein · chain R against A, TM-score 0.93
- B2RSH2 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I) subunit… · a predicted model of the same protein · chain A against A, TM-score 0.81
- P63212 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(O)… · a predicted model of the same protein · chain G against A, TM-score 0.71
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92633
- Every structure of UniProt P62871
- Every structure of UniProt B2RSH2
- Every structure of UniProt P63212
- Elsewhere: RCSB PDB 7TD0 · PDBe 7TD0 · UniProt Q92633 · UniProt P62871 · UniProt B2RSH2 · UniProt P63212
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