MolNFT v1 · #187744 · protein + DNA

Cryoem structure of DNA-pk complex VII

7SU3: “Cryoem structure of DNA-pk complex VII”. Electron microscopy, 2 ligands (ATP, IHP). MolNFT v1 #187744 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7SU3
Type: protein + DNA
Length: 5,037 residues
Chains: 7
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P78527, P12956, P13010
Ligands: ATP, IHP

Structure

electron microscopy · 7 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	3802	—	P78527
B	—	protein	496	—	P12956
C	—	protein	669	—	P13010
D	—	dna	24	—	—
E	—	dna	11	—	—
F	—	dna	19	—	—
G	—	dna	16	—	—

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · chains A
IHP · Inositol hexakisphosphate · ligand · chains B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7SU3 · CryoEM structure of DNA-PK complex VII · the same entry in another collection · chain G against G, TM-score 1.00
P13010 · AlphaFold monomer V2.0 prediction for X-ray repair cross- complementing protein 5 (P13010) · a predicted model of the same protein · chain C against A, TM-score 0.77
P12956 · AlphaFold monomer V2.0 prediction for X-ray repair cross- complementing protein 6 (P12956) · a predicted model of the same protein · chain B against A, TM-score 0.77

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P78527
Every structure of UniProt P12956
Every structure of UniProt P13010
Elsewhere: RCSB PDB 7SU3 · PDBe 7SU3 · UniProt P78527 · UniProt P12956 · UniProt P13010

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