Research workbench
Cryoem structure of DNA-pk complex VII
Analyse Cryoem structure of DNA-pk complex VII in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7SU3
- Type
- protein + DNA
- Length
- 5,037 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P78527, P12956, P13010
- Ligands
- ATP, IHP
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 3802 | — | P78527 |
| B | — | protein | 496 | — | P12956 |
| C | — | protein | 669 | — | P13010 |
| D | — | dna | 24 | — | — |
| E | — | dna | 11 | — | — |
| F | — | dna | 19 | — | — |
| G | — | dna | 16 | — | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains A
- IHP · Inositol hexakisphosphate · ligand · chains B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7SU3 · CryoEM structure of DNA-PK complex VII · the same entry in another collection · chain G against G, TM-score 1.00
- P13010 · AlphaFold monomer V2.0 prediction for X-ray repair cross- complementing protein 5 (P13010) · a predicted model of the same protein · chain C against A, TM-score 0.77
- P12956 · AlphaFold monomer V2.0 prediction for X-ray repair cross- complementing protein 6 (P12956) · a predicted model of the same protein · chain B against A, TM-score 0.77
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P78527
- Every structure of UniProt P12956
- Every structure of UniProt P13010
- Elsewhere: RCSB PDB 7SU3 · PDBe 7SU3 · UniProt P78527 · UniProt P12956 · UniProt P13010
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