MolNFT v1 · #186437 · protein
Tfh TCR bound to MHC class II iad presenting aggrecan epitope
7RDV: “Tfh TCR bound to MHC class II iad presenting aggrecan epitope”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #186437 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7RDV
- Type
- protein
- Length
- 787 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P04228, P01921
- Ligands
- NAG
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 181 | — | P04228 |
| B | — | protein | 171 | — | P01921 |
| C | — | protein | 183 | — | — |
| D | — | protein | 240 | — | — |
| H | — | protein | 12 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7RDV · TFH TCR bound to MHC Class II IAd presenting aggrecan epitope · the same entry in another collection · chain B against B, TM-score 1.00
- P04228 · AlphaFold monomer V2.0 prediction for H-2 class II histocompatibility antigen, a-D alpha… · a predicted model of the same protein · chain A against A, TM-score 0.95
- P01921 · AlphaFold monomer V2.0 prediction for H-2 class II histocompatibility antigen, a-D beta… · a predicted model of the same protein · chain B against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04228
- Every structure of UniProt P01921
- Elsewhere: RCSB PDB 7RDV · PDBe 7RDV · UniProt P04228 · UniProt P01921
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