Research workbench

Tfh TCR bound to MHC class II iad presenting aggrecan epitope

Analyse Tfh TCR bound to MHC class II iad presenting aggrecan epitope in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7RDV
Type: protein
Length: 787 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P04228, P01921
Ligands: NAG

Structure

x-ray diffraction · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	181	—	P04228
B	—	protein	171	—	P01921
C	—	protein	183	—	—
D	—	protein	240	—	—
H	—	protein	12	—	—

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7RDV · TFH TCR bound to MHC Class II IAd presenting aggrecan epitope · the same entry in another collection · chain B against B, TM-score 1.00
P04228 · AlphaFold monomer V2.0 prediction for H-2 class II histocompatibility antigen, a-D alpha… · a predicted model of the same protein · chain A against A, TM-score 0.95
P01921 · AlphaFold monomer V2.0 prediction for H-2 class II histocompatibility antigen, a-D beta… · a predicted model of the same protein · chain B against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04228
Every structure of UniProt P01921
Elsewhere: RCSB PDB 7RDV · PDBe 7RDV · UniProt P04228 · UniProt P01921

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