MolNFT v1 · #186358 · protein + DNA
Human DNA polymerase beta crosslinked ternary complex 1
7RBG: “Human DNA polymerase beta crosslinked ternary complex 1”. X-ray diffraction, 5 ligands (DCP, QPJ, CA). MolNFT v1 #186358 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7RBG
- Type
- protein + DNA
- Length
- 354 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P06746
- Ligands
- DCP, QPJ, CA, NA, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| T | — | dna | 16 | — | — |
| P | — | dna | 10 | — | — |
| D | — | dna | 5 | — | — |
| A | — | protein | 323 | — | P06746 |
Ligands and binding sites
- DCP · 2'-deoxycytidine-5'-triphosphate · ligand · chains T, P, A
- QPJ · 2-deoxy-3,5-di-O-phosphono-D-erythro-pentitol · ligand · chains D, A
- CA · Calcium ion · metal · 3 copies · chains A, D, P
- NA · Sodium ion · metal · 2 copies · chains P, A, D
- CL · Chloride ion · ion · 2 copies · chains A, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06746
- Elsewhere: RCSB PDB 7RBG · PDBe 7RBG · UniProt P06746
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