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Ligand · QPJ

QPJ · 2-deoxy-3,5-di-O-phosphono-D-erythro-pentitol

QPJ, 2-deoxy-3,5-di-O-phosphono-D-erythro-pentitol (C5 H14 O10 P2, 296.1 g/mol), in the MolNFT structures on GenesisL1: bound in 17 records (11 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
QPJ
Formula
C5 H14 O10 P2
Class
ligand
Structures
17
PDB entries
11

Binding sites

QPJ in 17 structures; the first of them:

  • 7RBE · Human DNA polymerase beta crosslinked binary complex - A · QPJ A401 · binds GLU26, LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBF · Human DNA polymerase beta crosslinked binary complex - B · QPJ A401 · binds DG1, GLU26, LYS35, TYR39, LYS68, LYS72, LYS84
  • 7RBG · Human DNA polymerase beta crosslinked ternary complex 1 · QPJ A402 · binds DG1, GLU26, LYS35, TYR39, LYS68, LYS72
  • 7RBJ · Human DNA polymerase beta crosslinked complex, 30 s Ca to Mg exchange · QPJ A401 · binds GLU26, LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBK · Human DNA polymerase beta crosslinked complex, 40 s Ca to Mg exchange · QPJ A401 · binds GLU26, LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBL · Human DNA polymerase beta crosslinked complex, 60 s Ca to Mg exchange · QPJ A401 · binds GLU26, LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBE · Human DNA polymerase beta crosslinked binary complex - a · QPJ A401 · binds LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBF · Human DNA polymerase beta crosslinked binary complex - B · QPJ A401 · binds DG1, LYS35, TYR39, LYS68, LYS72, LYS84
  • 7RBG · Human DNA polymerase beta crosslinked ternary complex 1 · QPJ A402 · binds DG1, LYS35, TYR39, LYS68, LYS72
  • 7RBH · Human DNA polymerase beta crosslinked ternary complex 2 · QPJ A401 · binds LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBI · Human DNA polymerase beta crosslinked complex, 20 S ca to mg exchange · QPJ A401 · binds LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBJ · Human DNA polymerase beta crosslinked complex, 30 S ca to mg exchange · QPJ A401 · binds LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBK · Human DNA polymerase beta crosslinked complex, 40 S ca to mg exchange · QPJ A401 · binds GLU26, LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBL · Human DNA polymerase beta crosslinked complex, 60 S ca to mg exchange · QPJ A401 · binds LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBM · Human DNA polymerase beta crosslinked complex, 60 S ca to mn exchange · QPJ A401 · binds GLU26, LYS35, TYR39, LYS68, LYS72, DG1
  • 7RBN · Human DNA polymerase beta crosslinked complex, 20 min ca to mg exchange · QPJ A401 · binds LYS35, TYR39, LYS68, LYS72, LYS84, DG1
  • 7RBO · Human DNA polymerase beta crosslinked complex, 60 min ca to mg exchange · QPJ A401 · binds LYS35, LYS68, LYS72, LYS84, DG1

Residues it binds most

LYS 17, DG 17, TYR 16, GLU 8 (residue and the binding sites it lines).

Found with

  • PPV · Pyrophosphate
  • MG · Magnesium ion
  • DCP · 2'-deoxycytidine-5'-triphosphate
  • NA · Sodium ion
  • CA · Calcium ion
  • CL · Chloride ion
  • CIT · Citric acid
  • EDO · 1,2-ethanediol
  • PEG · Di(hydroxyethyl)ether
  • MN · Manganese (II) ion

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