MolNFT v1 · #186356 · protein + DNA

Human DNA polymerase beta crosslinked binary complex - a

7RBE: “Human DNA polymerase beta crosslinked binary complex - a”. X-ray diffraction, 2 ligands (QPJ, NA). MolNFT v1 #186356 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7RBE
Type: protein + DNA
Length: 346 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P06746
Ligands: QPJ, NA

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	315	—	P06746
D	—	dna	5	—	—
P	—	dna	10	—	—
T	—	dna	16	—	—

Ligands and binding sites

QPJ · 2-deoxy-3,5-di-O-phosphono-D-erythro-pentitol · ligand · chains A, D
NA · Sodium ion · metal · 4 copies · chains A, P, D
CIT · Citric acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7RBE · Human DNA polymerase beta crosslinked binary complex - A · the same entry in another collection · chain A against A, TM-score 1.00
P06746 · AlphaFold monomer V2.0 prediction for DNA polymerase beta (P06746) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06746
Elsewhere: RCSB PDB 7RBE · PDBe 7RBE · UniProt P06746

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