MolNFT v1 · #185501 · protein + DNA + RNA
Cryoem structure of E.COLI RNA polymerase elongation complex bound to nusa (nusa elongation complex in less-swiveled conformation)
7PYJ: “Cryoem structure of E.COLI RNA polymerase elongation complex bound to nusa (nusa elongation complex in…”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #185501 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7PYJ
- Type
- protein + DNA + RNA
- Length
- 3,855 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A7Z4, P0A8V4, P0A8T8, P0A800, D7Y526
- Ligands
- ZN, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 229 | — | P0A7Z4 |
| B | — | protein | 298 | — | P0A7Z4 |
| C | — | protein | 1341 | — | P0A8V4 |
| D | — | protein | 1334 | — | P0A8T8 |
| E | — | protein | 90 | — | P0A800 |
| N | — | dna | 27 | — | — |
| R | — | rna | 11 | — | — |
| T | — | dna | 30 | — | — |
| F | — | protein | 495 | — | D7Y526 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7PYJ · CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA (NusA… · the same entry in another collection · chain F against F, TM-score 1.00
- P0A8T8 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta' (P0A8T8) · a predicted model of the same protein · chain D against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A7Z4
- Every structure of UniProt P0A8V4
- Every structure of UniProt P0A8T8
- Every structure of UniProt P0A800
- Every structure of UniProt D7Y526
- Elsewhere: RCSB PDB 7PYJ · PDBe 7PYJ · UniProt P0A7Z4 · UniProt P0A8V4 · UniProt P0A8T8 · UniProt P0A800 · UniProt D7Y526
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