MolNFT v1 · #185141 · protein
Chimeric carminomycin-4-O-methyltransferase (dnrk) with regions from 10-hydroxylase rdmb and 10-decarboxylase tamk
7PGA: “Chimeric carminomycin-4-O-methyltransferase (dnrk) with regions from 10-hydroxylase rdmb and 10-decarboxylase…”. X-ray diffraction, 1 ligand (VAK). MolNFT v1 #185141 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7PGA
- Type
- protein
- Length
- 1,356 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q06528, I2N5E8, Q54527
- Ligands
- VAK
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 340 | — | Q06528, I2N5E8, Q54527 |
| B | — | protein | 340 | — | Q06528, I2N5E8, Q54527 |
| C | — | protein | 334 | — | Q06528, I2N5E8, Q54527 |
| D | — | protein | 342 | — | Q06528, I2N5E8, Q54527 |
Ligands and binding sites
- VAK · methyl (1R,2R,4S)-2-ethyl-2,4,5,7-tetrahydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate · ligand · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7PGA · Chimeric carminomycin-4-O-methyltransferase (DnrK) with regions from 10-hydroxylase RdmB… · the same entry in another collection · chain D against D, TM-score 1.00
- Q06528 · AlphaFold monomer V2.0 prediction for carminomycin 4-O-methyltransferase dnrk (Q06528) · a predicted model of the same protein · chain B against A, TM-score 0.97
- Q54527 · AlphaFold monomer V2.0 prediction for aclacinomycin 10-hydroxylase rdmb (Q54527) · a predicted model of the same protein · chain C against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06528
- Every structure of UniProt I2N5E8
- Every structure of UniProt Q54527
- Elsewhere: RCSB PDB 7PGA · PDBe 7PGA · UniProt Q06528 · UniProt I2N5E8 · UniProt Q54527
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