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MolNFT v1 · #185019 · protein

The third PDZ domain of PDZD7 complexed with the PDZ-binding motif of EXOC4

7PC5: “The third PDZ domain of PDZD7 complexed with the PDZ-binding motif of EXOC4”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #185019 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7PC5
Type
protein
Length
411 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9H5P4, P07355, Q96A65
Ligands
CA

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein405—Q9H5P4, P07355
B—protein6—Q96A65

Ligands and binding sites

  • CA · Calcium ion · metal · 5 copies · chains A
  • GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7PC5 · The third PDZ domain of PDZD7 complexed with the PDZ-binding motif of EXOC4 · the same entry in another collection · chain A against A, TM-score 1.00
  • P07355 · AlphaFold monomer V2.0 prediction for annexin A2 (P07355) · a predicted model of the same protein · chain A against A, TM-score 0.78
  • Q96A65 · AlphaFold monomer V2.0 prediction for exocyst complex component 4 (Q96A65) · a predicted model of the same protein · chain B against A, TM-score 0.66
  • Q9H5P4 · AlphaFold monomer V2.0 prediction for PDZ domain-containing protein 7 (Q9H5P4) · a predicted model of the same protein · chain A against A, TM-score 0.26

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