MolNFT v1 · #184136 · protein
Crystal structure of the human METTL3-METTL14 complex with compound UOZ120
7OEM · N6-adenosine-methyltransferase catalytic subunit: “Crystal structure of the human METTL3-METTL14 complex with compound UOZ120”. X-ray diffraction, 2 ligands (VB8, MG), 6 pockets (best druggability 0.59). MolNFT v1 #184136 on…
- PDB
- 7OEM
- Type
- protein
- Length
- 441 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N6-adenosine-methyltransferase catalytic subunit; N6-adenosine-methyltransferase…
- EC
- 2.1.1.348
- UniProt
- Q86U44, Q9HCE5
- Ligands
- VB8, MG
- Pockets
- 6 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | N6-adenosine-methyltransferase catalytic subunit (EC 2.1.1.348) | protein | 199 | 23% helix, 28% strand | Q86U44 |
| B | N6-adenosine-methyltransferase non-catalytic subunit | protein | 242 | 26% helix, 24% strand | Q9HCE5 |
Ligands and binding sites
- VB8 · 4-[(4,4-dimethylpiperidin-1-yl)methyl]-2-methylsulfanyl-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide · ligand · chains A
- MG · Magnesium ion · metal · 4 copies · chains A, B
- ACT · Acetate ion · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 308 | 0.59 | 0.78 | 38 | VB8 |
| 2 | 238 | 0.58 | 0.79 | 32 | empty |
| 3 | 71 | 0.40 | 0.79 | 20 | empty |
| 4 | 68 | 0.33 | 0.76 | 24 | empty |
| 5 | 56 | 0.33 | 0.77 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1991 Ų buried · 36 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7OEM · Crystal structure of the human METTL3-METTL14 complex with compound UOZ120 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HCE5 · AlphaFold monomer V2.0 prediction for N6-adenosine-methyltransferase non-catalytic… · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q86U44
- Every structure of UniProt Q9HCE5
- Elsewhere: RCSB PDB 7OEM · PDBe 7OEM · UniProt Q86U44 · UniProt Q9HCE5
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