MolNFT v1 · #184072 · protein
Cryo-EM structure of yeast OST6P containing oligosaccharyltransferase complex
7OCI: “Cryo-EM structure of yeast OST6P containing oligosaccharyltransferase complex”. Electron microscopy, 7 ligands (PEE, AJP, V8K). MolNFT v1 #184072 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OCI
- Type
- protein
- Length
- 2,095 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P41543, P46964, Q03723, Q99380, Q92316, P39007, P33767, Q02795
- Ligands
- PEE, AJP, V8K, NAG, MAN, BMA, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 434 | — | P41543 |
| B | — | protein | 108 | — | P46964 |
| C | — | protein | 119 | — | Q03723 |
| D | — | protein | 35 | — | Q99380 |
| E | — | protein | 85 | — | Q92316 |
| F | — | protein | 639 | — | P39007 |
| G | — | protein | 393 | — | P33767 |
| H | — | protein | 258 | — | Q02795 |
| I | — | protein | 24 | — | — |
Ligands and binding sites
- PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine · ligand · 6 copies · chains A, E, F, B, C, D, G, H
- AJP · Digitonin · ligand · 2 copies · chains B, F, D, E
- V8K · Dolichylphosphate · ligand · chains B, F
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 7 copies · chains A, F, G
- MAN · alpha-D-mannopyranose · sugar · 4 copies · chains G, H
- BMA · beta-D-mannopyranose · sugar · chains G
- MG · Magnesium ion · metal · chains F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7OCI · Cryo-EM structure of yeast Ost6p containing oligosaccharyltransferase complex · the same entry in another collection · chain I against I, TM-score 1.00
- P41543 · AlphaFold monomer V2.0 prediction for dolichyl- diphosphooligosaccharide--protein… · a predicted model of the same protein · chain A against A, TM-score 0.98
- P46964 · AlphaFold monomer V2.0 prediction for dolichyl- diphosphooligosaccharide--protein… · a predicted model of the same protein · chain B against A, TM-score 0.96
- P39007 · AlphaFold monomer V2.0 prediction for dolichyl- diphosphooligosaccharide--protein… · a predicted model of the same protein · chain F against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41543
- Every structure of UniProt P46964
- Every structure of UniProt Q03723
- Every structure of UniProt Q99380
- Every structure of UniProt Q92316
- Every structure of UniProt P39007
- Every structure of UniProt P33767
- Every structure of UniProt Q02795
- Elsewhere: RCSB PDB 7OCI · PDBe 7OCI · UniProt P41543 · UniProt P46964 · UniProt Q03723 · UniProt Q99380 · UniProt Q92316 · UniProt P39007 · UniProt P33767 · UniProt Q02795
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