Ligand · V8K

V8K · Dolichylphosphate

V8K, Dolichylphosphate (C55 H91 O4 P, 847.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: V8K
Formula: C55 H91 O4 P
Class: ligand
Structures: 2
PDB entries: 1

Binding sites

V8K in 2 structures; the first of them:

7OCI · Cryo-EM structure of yeast Ost6p containing oligosaccharyltransferase complex · V8K F903 · binds LEU54, VAL55, GLY58, CYS84, VAL85, PHE88, VAL89, TRP208 and 12 more
7OCI · Cryo-EM structure of yeast OST6P containing oligosaccharyltransferase complex · V8K F903 · binds CYS84, VAL85, TRP208, ASN216, GLY271, PHE273, GLY274, GLN277 and 3 more

Residues it binds most

GLY 2, PHE 2, LEU 2, VAL 2, ARG 2, ASN 2, CYS 2, GLN 2, TRP 2 (residue and the binding sites it lines).

Found with

AJP · Digitonin
PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
MG · Magnesium ion
BMA · beta-D-mannopyranose
MAN · alpha-D-mannopyranose
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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