MolNFT v1 · #184048 · protein + RNA
Srp-sr at the distal site conformation
7OBQ: “Srp-sr at the distal site conformation”. Electron microscopy, 3 ligands (GNP, GTP, MG). MolNFT v1 #184048 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OBQ
- Type
- protein + RNA
- Length
- 1,840 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- J9PAS6, A0A7I9EWR8, Q00004, G1STG2, P61010, A0A5F9CI80, P33731
- Ligands
- GNP, GTP, MG
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | — | rna | 165 | — | — |
| q | — | protein | 104 | — | J9PAS6 |
| s | — | protein | 20 | — | A0A7I9EWR8 |
| u | — | protein | 441 | — | Q00004 |
| v | — | protein | 201 | — | G1STG2 |
| x | — | protein | 393 | — | P61010 |
| y | — | protein | 454 | — | A0A5F9CI80 |
| z | — | protein | 62 | — | P33731 |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · 2 copies · chains x, y
- GTP · Guanosine-5'-triphosphate · ligand · chains v
- MG · Magnesium ion · metal · 3 copies · chains v, x, y
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7OBQ · SRP-SR at the distal site conformation · the same entry in another collection · chain z against z, TM-score 1.00
- P61010 · AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda protein (P61010) · a predicted model of the same protein · chain x against A, TM-score 0.67
- Q00004 · AlphaFold monomer V2.0 prediction for signal recognition particle subunit SRP68 (Q00004) · a predicted model of the same protein · chain u against A, TM-score 0.44
- P33731 · AlphaFold monomer V2.0 prediction for signal recognition particle subunit SRP72 (P33731) · a predicted model of the same protein · chain z against A, TM-score 0.39
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J9PAS6
- Every structure of UniProt A0A7I9EWR8
- Every structure of UniProt Q00004
- Every structure of UniProt G1STG2
- Every structure of UniProt P61010
- Every structure of UniProt A0A5F9CI80
- Every structure of UniProt P33731
- Elsewhere: RCSB PDB 7OBQ · PDBe 7OBQ · UniProt J9PAS6 · UniProt A0A7I9EWR8 · UniProt Q00004 · UniProt G1STG2 · UniProt P61010 · UniProt A0A5F9CI80 · UniProt P33731
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