MolNFT v1 · #183776 · protein
Crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 in complex with ITF3985
7O2R: “Crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 in complex with ITF3985”. X-ray diffraction, 4 ligands (V05, K, ZN). MolNFT v1 #183776 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7O2R
- Type
- protein
- Length
- 357 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F8W4B7
- Ligands
- V05, K, ZN, IOD
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 357 | — | F8W4B7 |
Ligands and binding sites
- V05 · 3,5-bis(fluoranyl)-~{N}-oxidanyl-4-[(5-pyrimidin-2-yl-1,2,3,4-tetrazol-2-yl)methyl]benzamide · ligand · chains A
- K · Potassium ion · metal · 2 copies · chains A
- ZN · Zinc ion · metal · chains A
- IOD · Iodide ion · ion · 6 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7O2R · Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F8W4B7
- Elsewhere: RCSB PDB 7O2R · PDBe 7O2R · UniProt F8W4B7
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