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Ligand · V05

V05 · 3,5-bis(fluoranyl)-~{N}-oxidanyl-4-[(5-pyrimidin-2-yl-1,2,3,4-tetrazol-2-yl)methyl]benzamide

V05, 3,5-bis(fluoranyl)-~{N}-oxidanyl-4-[(5-pyrimidin-2-yl-1,2,3,4-tetrazol-2-yl)methyl]benzamide (C13 H9 F2 N7 O2, 333.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
V05
Formula
C13 H9 F2 N7 O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

V05 in 2 structures; the first of them:

  • 7O2R · Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with… · V05 A801 · binds HIS463, PRO464, SER531, HIS574, GLY582, PHE583, ASP612, HIS614 and 6 more
  • 7O2R · Crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 in complex with… · V05 A801 · binds HIS463, PRO464, SER531, HIS574, GLY582, PHE583, ASP612, HIS614 and 4 more

Residues it binds most

HIS 2, GLY 2, ASP 2, PHE 2, PRO 2, SER 2, TYR 2, LEU 1 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • ZN · Zinc ion
  • IOD · Iodide ion
  • PEG · Di(hydroxyethyl)ether

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