GL1X · GenesisL1 explorer

MolNFT v1 · #182084 · protein

Concanavalin a bound to a DNA glycoconjugate, T(MAN-T)TT

7MGD: “Concanavalin a bound to a DNA glycoconjugate, T(MAN-T)TT”. X-ray diffraction, 3 ligands (MMA, MN, CA). MolNFT v1 #182084 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7MGD
Type
protein
Length
924 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P02866
Ligands
MMA, MN, CA

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B, C, D—protein231—P02866

Ligands and binding sites

  • MMA · methyl alpha-D-mannopyranoside · sugar · 4 copies · chains A, B, C, D
  • MN · Manganese (II) ion · metal · 4 copies · chains A, B, C, D
  • CA · Calcium ion · metal · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7MGD · Concanavalin A bound to a DNA glycoconjugate, T(Man-T)TT · the same entry in another collection · chain D against D, TM-score 1.00
  • P02866 · AlphaFold monomer V2.0 prediction for concanavalin-a (P02866) · a predicted model of the same protein · chain A against A, TM-score 0.52

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