MolNFT v1 · #182081 · protein + DNA

Concanavalin a bound to a DNA glycoconjugate, man-aaattt

7MGA: “Concanavalin a bound to a DNA glycoconjugate, man-aaattt”. X-ray diffraction, 4 ligands (SQ0, MAN, MN). MolNFT v1 #182081 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7MGA
Type: protein + DNA
Length: 475 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P02866
Ligands: SQ0, MAN, MN, CA

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	231	—	P02866
B	—	protein	232	—	P02866
C, D	—	dna	6	—	—

Ligands and binding sites

SQ0 · 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione · ligand · 2 copies · chains A, C, B, D
MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A, B
MN · Manganese (II) ion · metal · 2 copies · chains A, B
CA · Calcium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7MGA · Concanavalin A bound to a DNA glycoconjugate, Man-AAATTT · the same entry in another collection · chain A against A, TM-score 1.00
P02866 · AlphaFold monomer V2.0 prediction for concanavalin-a (P02866) · a predicted model of the same protein · chain A against A, TM-score 0.51

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02866
Elsewhere: RCSB PDB 7MGA · PDBe 7MGA · UniProt P02866

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.