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Ligand · SQ0

SQ0 · 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione

SQ0, 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione (C14 H24 N2 O5, 300.4 g/mol), in the MolNFT structures on GenesisL1: bound in 12 records (6 PDB entries). Every binding site with its residues…

Component
SQ0
Formula
C14 H24 N2 O5
Class
ligand
Structures
12
PDB entries
6

Binding sites

SQ0 in 12 structures; the first of them:

  • 7MG5 · Concanavalin A bound to a DNA glycoconjugate, Man-ATAT · SQ0 C101 · binds TYR12, PRO13, ASN14, ASP16, SER21, TYR22, PRO23, LEU99 and 2 more
  • 7MG6 · Concanavalin A bound to a DNA glycoconjugate, Man-AGCT · SQ0 C101 · binds TYR12, PRO13, ASN14, ASP16, SER21, PRO23, LEU99, TYR100 and 2 more
  • 7MG7 · Concanavalin A bound to a DNA glycoconjugate, Man-GTAC · SQ0 C101 · binds TYR12, PRO13, ASN14, SER21, TYR22, PRO23, LEU99, TYR100 and 2 more
  • 7MG8 · Concanavalin A bound to a DNA glycoconjugate, Man-CGCG · SQ0 C101 · binds TYR12, PRO13, SER21, TYR22, PRO23, LEU99, TYR100, DC1
  • 7MG9 · Concanavalin A bound to DNA glycoconjugates, Man-TTTT and Man-AAAA · SQ0 C101 · binds TYR12, PRO13, ASN14, ASP16, SER21, PRO23, TYR100, DA1
  • 7MGA · Concanavalin A bound to a DNA glycoconjugate, Man-AAATTT · SQ0 C101 · binds TYR12, PRO13, SER21, PRO23, LEU99, TYR100, HIS205, DA1
  • 7MG5 · Concanavalin a bound to a DNA glycoconjugate, man-atat · SQ0 C101 · binds TYR12, PRO13, ASN14, ASP16, SER21, TYR22, PRO23, LEU99 and 2 more
  • 7MG6 · Concanavalin a bound to a DNA glycoconjugate, man-agct · SQ0 C101 · binds TYR12, PRO13, ASN14, ASP16, SER21, PRO23, LEU99, TYR100 and 2 more
  • 7MG7 · Concanavalin a bound to a DNA glycoconjugate, man-gtac · SQ0 C101 · binds TYR12, PRO13, ASN14, SER21, TYR22, PRO23, LEU99, TYR100 and 2 more
  • 7MG8 · Concanavalin a bound to a DNA glycoconjugate, man-cgcg · SQ0 C101 · binds TYR12, PRO13, SER21, TYR22, PRO23, LEU99, TYR100, DC1
  • 7MG9 · Concanavalin a bound to DNA glycoconjugates, man-tttt and man-aaaa · SQ0 C101 · binds TYR12, PRO13, ASN14, ASP16, SER21, PRO23, TYR100, DA1
  • 7MGA · Concanavalin a bound to a DNA glycoconjugate, man-aaattt · SQ0 C101 · binds TYR12, PRO13, SER21, PRO23, LEU99, TYR100, HIS205, DA1

Residues it binds most

TYR 24, PRO 24, LEU 20, ASN 18, DA 14, HIS 14, SER 14, ASP 12, THR 10, DC 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • MN · Manganese (II) ion
  • MAN · alpha-D-mannopyranose

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