MolNFT v1 · #182076 · protein + DNA
Concanavalin a bound to a DNA glycoconjugate, man-atat
7MG5: “Concanavalin a bound to a DNA glycoconjugate, man-atat”. X-ray diffraction, 4 ligands (SQ0, MAN, MN). MolNFT v1 #182076 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MG5
- Type
- protein + DNA
- Length
- 474 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P02866
- Ligands
- SQ0, MAN, MN, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 233 | — | P02866 |
| C, D | — | dna | 4 | — | — |
Ligands and binding sites
- SQ0 · 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione · ligand · 2 copies · chains A, C, B, D
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02866
- Elsewhere: RCSB PDB 7MG5 · PDBe 7MG5 · UniProt P02866
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