MolNFT v1 · #181879 · protein
Xfel crystal structure of the prostaglandin D2 receptor CRTH2 in complex with 15R-methyl-PGD2
7M8W: “Xfel crystal structure of the prostaglandin D2 receptor CRTH2 in complex with 15R-methyl-PGD2”. X-ray diffraction, 3 ligands (YSS, NA, SO4). MolNFT v1 #181879 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M8W
- Type
- protein
- Length
- 437 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9Y5Y4, D9IEF7
- Ligands
- YSS, NA, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 437 | — | Q9Y5Y4, D9IEF7 |
Ligands and binding sites
- YSS · 15R-methyl-prostaglandin D2 · ligand · chains A
- NA · Sodium ion · metal · chains A
- SO4 · Sulfate ion · ion · 5 copies · chains A
- FLC · Citrate anion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7M8W · XFEL crystal structure of the prostaglandin D2 receptor CRTH2 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y5Y4 · AlphaFold monomer V2.0 prediction for prostaglandin D2 receptor 2 (Q9Y5Y4) · a predicted model of the same protein · chain A against A, TM-score 0.72
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y5Y4
- Every structure of UniProt D9IEF7
- Elsewhere: RCSB PDB 7M8W · PDBe 7M8W · UniProt Q9Y5Y4 · UniProt D9IEF7
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