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Ligand · YSS

YSS · 15R-methyl-prostaglandin D2

YSS, 15R-methyl-prostaglandin D2 (C21 H34 O5, 366.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
YSS
Formula
C21 H34 O5
Class
ligand
Structures
2
PDB entries
1

Binding sites

YSS in 2 structures; the first of them:

  • 7M8W · XFEL crystal structure of the prostaglandin D2 receptor CRTH2 in complex with… · YSS A2401 · binds MET17, PHE87, PHE90, TRP97, HIS107, SER108, PHE111, PHE112 and 12 more
  • 7M8W · Xfel crystal structure of the prostaglandin D2 receptor CRTH2 in complex with… · YSS A2401 · binds PHE87, PHE90, TRP97, HIS107, PHE111, PHE112, ARG170, MET181 and 9 more

Residues it binds most

PHE 2, TYR 2, MET 2, ARG 2, CYS 2, HIS 2, LEU 2, LYS 2, PRO 2, SER 1 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • SO4 · Sulfate ion
  • FLC · Citrate anion

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