MolNFT v1 · #179876 · protein + DNA
Mycobacterium tuberculosis wt rnap transcription open promoter complex with WHIB7 promoter
7KIN: “Mycobacterium tuberculosis wt rnap transcription open promoter complex with WHIB7 promoter”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #179876 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KIN
- Type
- protein + DNA
- Length
- 3,612 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A5U8D3, A5U052, A0A045J9E2, A0A0T9N9K3, A0A0H3LGM9, P9WHJ4, P9WJG2
- Ligands
- ZN, MG
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 225 | — | A5U8D3 |
| B | — | protein | 237 | — | A5U8D3 |
| C | — | protein | 1111 | — | A5U052 |
| D | — | protein | 1270 | — | A0A045J9E2 |
| E | — | protein | 83 | — | A0A0T9N9K3 |
| F | — | protein | 317 | — | A0A0H3LGM9 |
| J | — | protein | 107 | — | P9WHJ4 |
| M | — | protein | 159 | — | P9WJG2 |
| O | — | dna | 54 | — | — |
| P | — | dna | 49 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KIN · Mycobacterium tuberculosis WT RNAP transcription open promoter complex with WhiB7 promoter · the same entry in another collection · chain P against P, TM-score 1.00
- A5U052 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (A5U052) · a predicted model of the same protein · chain C against A, TM-score 0.99
- A5U8D3 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha (A5U8D3) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5U8D3
- Every structure of UniProt A5U052
- Every structure of UniProt A0A045J9E2
- Every structure of UniProt A0A0T9N9K3
- Every structure of UniProt A0A0H3LGM9
- Every structure of UniProt P9WHJ4
- Every structure of UniProt P9WJG2
- Elsewhere: RCSB PDB 7KIN · PDBe 7KIN · UniProt A5U8D3 · UniProt A5U052 · UniProt A0A045J9E2 · UniProt A0A0T9N9K3 · UniProt A0A0H3LGM9 · UniProt P9WHJ4 · UniProt P9WJG2
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