MolNFT v1 · #178648 · protein
Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 iodide- derivative
7JHI: “Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 iodide- derivative”. X-ray diffraction, 7 ligands (UDP, NAG, BMA). MolNFT v1 #178648 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7JHI
- Type
- protein
- Length
- 1,311 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NY97
- Ligands
- UDP, NAG, BMA, MAN, MG, IOD, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 330 | — | Q9NY97 |
| B | — | protein | 328 | — | Q9NY97 |
| C | — | protein | 331 | — | Q9NY97 |
| D | — | protein | 322 | — | Q9NY97 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · 2 copies · chains A, C
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 10 copies · chains A, B, C, D
- BMA · beta-D-mannopyranose · sugar · 3 copies · chains A, C, D
- MAN · alpha-D-mannopyranose · sugar · chains C
- MG · Magnesium ion · metal · 3 copies · chains A, B, C
- IOD · Iodide ion · ion · 41 copies · chains A, C, B, D
- CL · Chloride ion · ion · 5 copies · chains A, B, C, D
- PG4 · Tetraethylene glycol · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7JHI · Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 iodide-derivative · the same entry in another collection · chain D against D, TM-score 1.00
- Q9NY97 · AlphaFold monomer V2.0 prediction for N-acetyllactosaminide… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NY97
- Elsewhere: RCSB PDB 7JHI · PDBe 7JHI · UniProt Q9NY97
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