MolNFT v1 · #178245 · protein
Homo sapiens prolyl-tRNA synthetase (hsprs) in complex with L-proline and compound L96
7F9C: “Homo sapiens prolyl-tRNA synthetase (hsprs) in complex with L-proline and compound L96”. X-ray diffraction, 4 ligands (1UI, CA, ZN). MolNFT v1 #178245 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7F9C
- Type
- protein
- Length
- 976 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P07814
- Ligands
- 1UI, CA, ZN, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 489 | — | P07814 |
| B | — | protein | 487 | — | P07814 |
Ligands and binding sites
- 1UI · 4-[(3S)-3-cyano-3-cyclopropyl-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(5-methoxypyridin-3-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 6 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- CL · Chloride ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7F9C · Homo sapiens Prolyl-tRNA Synthetase (HsPRS) in Complex with L-proline and compound L96 · the same entry in another collection · chain A against A, TM-score 1.00
- P07814 · AlphaFold monomer V2.0 prediction for bifunctional GLUTAMATE/PROLINE --tRNA ligase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07814
- Elsewhere: RCSB PDB 7F9C · PDBe 7F9C · UniProt P07814
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