MolNFT v1 · #178123 · protein
Dnqx-bound GLUK2-2XNETO2 complex
7F5A: “Dnqx-bound GLUK2-2XNETO2 complex”. Electron microscopy, 2 ligands (NAG, BMA). MolNFT v1 #178123 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7F5A
- Type
- protein
- Length
- 3,912 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P42260, C6K2K4
- Ligands
- NAG, BMA
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 835 | — | P42260 |
| B, D | — | protein | 818 | — | P42260 |
| E | — | protein | 309 | — | C6K2K4 |
| F | — | protein | 297 | — | C6K2K4 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 18 copies · chains A, B, C, D
- BMA · beta-D-mannopyranose · sugar · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7F5A · DNQX-bound GluK2-2xNeto2 complex · the same entry in another collection · chain F against F, TM-score 1.00
- P42260 · AlphaFold monomer V2.0 prediction for glutamate receptor ionotropic, kainate 2 (P42260) · a predicted model of the same protein · chain C against A, TM-score 0.70
- C6K2K4 · AlphaFold monomer V2.0 prediction for neuropilin and tolloid-like protein 2 (C6K2K4) · a predicted model of the same protein · chain E against A, TM-score 0.68
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42260
- Every structure of UniProt C6K2K4
- Elsewhere: RCSB PDB 7F5A · PDBe 7F5A · UniProt P42260 · UniProt C6K2K4
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