MolNFT v1 · #175493 · protein

ATPRR1 with NADP+ and (-)pinoresinol

7CSC: “ATPRR1 with NADP+ and (-)pinoresinol”. X-ray diffraction, 2 ligands (GEF, NDP). MolNFT v1 #175493 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7CSC
Type: protein
Length: 1,853 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9FVQ6
Ligands: GEF, NDP

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
E, F, A, B, D	—	protein	309	—	Q9FVQ6
C	—	protein	308	—	Q9FVQ6

Ligands and binding sites

GEF · 4-[(3r,3as,6r,6as)-6-(3-methoxy-4-oxidanyl-phenyl)-1,3, 3A,4,6,6A-hexahydrofuro[3,4-c]furan-3-yl]-2-methoxy-phenol · ligand · 6 copies · chains E, F, A, B, C, D
NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate · ligand · 6 copies · chains E, F, A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7CSC · AtPrR1 with NADP+ and (-)pinoresinol · the same entry in another collection · chain D against D, TM-score 1.00
Q9FVQ6 · AlphaFold monomer V2.0 prediction for pinoresinol reductase 1 (Q9FVQ6) · a predicted model of the same protein · chain E against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9FVQ6
Elsewhere: RCSB PDB 7CSC · PDBe 7CSC · UniProt Q9FVQ6

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