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MolNFT v1 · #173618 · protein

Cryo-EM structure of the human cak bound to ICEC0942 at 2.5 ångströms resolution

7B5O: “Cryo-EM structure of the human cak bound to ICEC0942 at 2.5 ångströms resolution”. Electron microscopy, 1 ligand (I74). MolNFT v1 #173618 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7B5O
Type
protein
Length
643 residues
Chains
3
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P51948, P51946, P50613
Ligands
I74

Structure

electron microscopy · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
H—protein65—P51948
I—protein281—P51946
J—protein297—P50613

Ligands and binding sites

  • I74 · (3R,4R)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol · ligand · chains J

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7B5O · Cryo-EM structure of the human CAK bound to ICEC0942 at 2.5 Angstroms resolution · the same entry in another collection · chain H against H, TM-score 1.00
  • P51946 · AlphaFold monomer V2.0 prediction for cyclin-H (P51946) · a predicted model of the same protein · chain I against A, TM-score 0.99
  • P50613 · AlphaFold monomer V2.0 prediction for cyclin-dependent kinase 7 (P50613) · a predicted model of the same protein · chain J against A, TM-score 0.93
  • P51948 · AlphaFold monomer V2.0 prediction for cdk-activating kinase assembly factor MAT1 (P51948) · a predicted model of the same protein · chain H against A, TM-score 0.78

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