UniProt P50613
Cyclin-dependent kinase 7 (P50613)
Cyclin-dependent kinase 7 (UniProt P50613), EC 2.7.11.22, 2.7.11.23: 21 experimental structures and 1 predicted model on GenesisL1, 9 ligands bound, 38 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- P50613
- Protein
- Cyclin-dependent kinase 7
- EC
- 2.7.11.22, 2.7.11.23
- Experimental structures
- 21
- Predicted models
- 1
- Ligands
- 9
- Pockets
- 38 · 7 records with a druggable one
Structures
22 records of P50613 in the MolNFT archive: 21 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1UA2 | Crystal Structure of Human CDK7 | x-ray diffraction | A, B, C, D | — | — |
| 1UA2 | Crystal structure of human CDK7 | x-ray diffraction | A, B, C, D | — | — |
| 6O9L | Human holo-pic in the closed state | electron microscopy | 8 | — | — |
| 6XBZ | Structure of the human cdk-activating kinase | electron microscopy | J | AGS | — |
| 6XD3 | Structure of the human CAK in complex with THZ1 | electron microscopy | J | V0G | — |
| 6XD3 | Structure of the human cak in complex with THZ1 | electron microscopy | J | V0G | — |
| 7B5O | Cryo-EM structure of the human cak bound to ICEC0942 at 2.5 ångströms resolution | electron microscopy | J | I74 | — |
| 7B5Q | Cryo-EM structure of the human CAK bound to ICEC0942 (PHENIX-OPLS3e) | electron microscopy | J | I74 | — |
| 7B5Q | Cryo-EM structure of the human cak bound to ICEC0942 (phenix-OPLS3E) | electron microscopy | J | I74 | — |
| 7EGC | p53-bound TFIID-based holo PIC on HDM2 promoter | electron microscopy | 8 | — | — |
| 7ENA | TFIID-based PIC-Mediator holo-complex in pre-assembled state (pre-hPIC-MED) | electron microscopy | 8 | — | — |
| 7ENC | TFIID-based PIC-Mediator holo-complex in fully-assembled state (hPIC-MED) | electron microscopy | 8 | — | — |
| 7NVR | Human Mediator with RNA Polymerase II Pre-initiation complex | electron microscopy | 8 | — | — |
| 7NVR | Human mediator with RNA polymerase II pre-initiation complex | electron microscopy | 8 | — | — |
| 8P73 | Cryo-EM structure of CAK in complex with inhibitor ICEC0829 | electron microscopy | J | X50, X58 | 4 (best 0.77) |
| 8P78 | Cryo-EM structure of CAK in complex with inhibitor dinaciclib | electron microscopy | J | 1QK | 5 (best 0.74) |
| 8PLZ | Cryo-EM structure of CAK in complex with inhibitor CT7030 | electron microscopy | J | ZQ6 | 5 (best 0.74) |
| 8R9A | A soakable crystal form of human CDK7 in complex with AMP-PNP | x-ray diffraction | A | I74 | 4 (best 0.63) |
| 8R9S | A soakable crystal form of human CDK7 in complex with AMP-PNP | x-ray diffraction | A, B | YPK | 9 (best 0.71) |
| 8R9U | A soakable crystal form of human CDK7 in complex with AMP-PNP | x-ray diffraction | A, B | YNK | 8 (best 0.60) |
| 8S0T | Cryo-EM structure of CAK in complex with SY-5609 | electron microscopy | J | YNK | 3 (best 0.71) |
| P50613 | AlphaFold monomer V2.0 prediction for cyclin-dependent kinase 7 (P50613) | predicted | A | — | — |
Ligands
- I74 · (3R,4R)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol · in 4 records
- V0G · N-(3-{[5-chloro-4-(1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)-4-{[4-(dimethylamino) butanoyl]amino}benzamide · in 2 records
- YNK · 7-dimethylphosphoryl-3-[2-[[(3~{S})-6,6-dimethylpiperidin-3-yl]amino]-5-(trifluoromethyl)pyrimidin-4-yl]-1~{H}-indole-6-carbonitrile · in 2 records
- 1QK · 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium · in 1 record
- AGS · Phosphothiophosphoric acid-adenylate ester · in 1 record
- X50 · (3R,4R)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidine-3,4-diol · in 1 record
- X58 · (3S,4S)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidine-3,4-diol · in 1 record
- YPK · [(3S)-1-[4-(dimethylamino)butanoyl]pyrrolidin-3-yl] 4-[(5-methyl-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-7-yl)amino]piperidine-1-carboxylate · in 1 record
- ZQ6 · (3~{R},4~{R})-4-[[[7-[(2-methoxyphenyl)methylamino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol · in 1 record
Experiment against prediction
- 8R9S chain A against the predicted model P50613: TM-score 0.95, RMSD 1.63 Å
- 8R9S chain B against the predicted model P50613: TM-score 0.95, RMSD 1.66 Å
- 1UA2 chain C against the predicted model P50613: TM-score 0.95, RMSD 1.44 Å
- 1UA2 chain C against the predicted model P50613: TM-score 0.95, RMSD 1.44 Å
- 8R9U chain B against the predicted model P50613: TM-score 0.95, RMSD 1.49 Å
- 1UA2 chain A against the predicted model P50613: TM-score 0.94, RMSD 1.45 Å
- 1UA2 chain A against the predicted model P50613: TM-score 0.94, RMSD 1.45 Å
- 8R9U chain A against the predicted model P50613: TM-score 0.94, RMSD 1.55 Å
- 1UA2 chain B against the predicted model P50613: TM-score 0.94, RMSD 1.54 Å
- 1UA2 chain B against the predicted model P50613: TM-score 0.94, RMSD 1.54 Å
Elsewhere
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