MolNFT v1 · #172379 · protein + RNA
50S deinococcus radiodurans ribosome bounded with mycinamicin I
7A0S: “50S deinococcus radiodurans ribosome bounded with mycinamicin I”. X-ray diffraction, 6 ligands (SPD, QU2, MG). MolNFT v1 #172379 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7A0S
- Type
- protein + RNA
- Length
- 5,921 residues
- Chains
- 28
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9RXJ9, Q9RXK2, Q9RXK1, Q9RXJ0, Q9RSL3, Q9RXY1, Q9RXJ2, Q9RSK9, Q9RXJ5, Q9RSJ5, Q9RSL2, Q9RWB4, Q9RSW7, Q9RY64, Q9RXJ7, Q9RXK0, Q9RXJ1, Q9RX88, Q9RY65, Q9RRG8, Q9RXJ4, Q9RSL0, P49228, Q9RSS4, Q9RSH2, Q9RSW6
- Ligands
- SPD, QU2, MG, CA, NA, K
Structure
x-ray diffraction · 28 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | — | rna | 2699 | — | — |
| Y | — | rna | 122 | — | — |
| A | — | protein | 272 | — | Q9RXJ9 |
| B | — | protein | 206 | — | Q9RXK2 |
| C | — | protein | 196 | — | Q9RXK1 |
| D | — | protein | 177 | — | Q9RXJ0 |
| E | — | protein | 171 | — | Q9RSL3 |
| G | — | protein | 142 | — | Q9RXY1 |
| H | — | protein | 134 | — | Q9RXJ2 |
| I | — | protein | 137 | — | Q9RSK9 |
| J | — | protein | 135 | — | Q9RXJ5 |
| K | — | protein | 115 | — | Q9RSJ5 |
| L | — | protein | 104 | — | Q9RSL2 |
| M | — | protein | 118 | — | Q9RWB4 |
| N | — | protein | 117 | — | Q9RSW7 |
| O | — | protein | 98 | — | Q9RY64 |
| P | — | protein | 129 | — | Q9RXJ7 |
| Q | — | protein | 92 | — | Q9RXK0 |
| R | — | protein | 110 | — | Q9RXJ1 |
| S | — | protein | 175 | — | Q9RX88 |
| T | — | protein | 74 | — | Q9RY65 |
| U | — | protein | 74 | — | Q9RRG8 |
| V | — | protein | 54 | — | Q9RXJ4 |
| W | — | protein | 55 | — | Q9RSL0 |
| Z | — | protein | 57 | — | P49228 |
| 1 | — | protein | 49 | — | Q9RSS4 |
| 2 | — | protein | 46 | — | Q9RSH2 |
| 3 | — | protein | 63 | — | Q9RSW6 |
Ligands and binding sites
- SPD · Spermidine · ligand · 8 copies · chains X, M, K, R
- QU2 · mycinamicin I · ligand · chains X
- MG · Magnesium ion · metal · 367 copies · chains X, O, A, Q, N, G, K, Z, C, 2, Y, J, T, I, U, B, M, 3
- CA · Calcium ion · metal · 5 copies · chains X
- NA · Sodium ion · metal · chains X
- K · Potassium ion · metal · chains X
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 4 copies · chains X
- EOH · Ethanol · additive · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7A0S · 50S Deinococcus radiodurans ribosome bounded with mycinamicin I · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RXJ9
- Every structure of UniProt Q9RXK2
- Every structure of UniProt Q9RXK1
- Every structure of UniProt Q9RXJ0
- Every structure of UniProt Q9RSL3
- Every structure of UniProt Q9RXY1
- Every structure of UniProt Q9RXJ2
- Every structure of UniProt Q9RSK9
- Every structure of UniProt Q9RXJ5
- Every structure of UniProt Q9RSJ5
- Every structure of UniProt Q9RSL2
- Every structure of UniProt Q9RWB4
- Every structure of UniProt Q9RSW7
- Every structure of UniProt Q9RY64
- Every structure of UniProt Q9RXJ7
- Every structure of UniProt Q9RXK0
- Every structure of UniProt Q9RXJ1
- Every structure of UniProt Q9RX88
- Every structure of UniProt Q9RY65
- Every structure of UniProt Q9RRG8
- Every structure of UniProt Q9RXJ4
- Every structure of UniProt Q9RSL0
- Every structure of UniProt P49228
- Every structure of UniProt Q9RSS4
- Every structure of UniProt Q9RSH2
- Every structure of UniProt Q9RSW6
- Elsewhere: RCSB PDB 7A0S · PDBe 7A0S · UniProt Q9RXJ9 · UniProt Q9RXK2 · UniProt Q9RXK1 · UniProt Q9RXJ0 · UniProt Q9RSL3 · UniProt Q9RXY1 · UniProt Q9RXJ2 · UniProt Q9RSK9 · UniProt Q9RXJ5 · UniProt Q9RSJ5 · UniProt Q9RSL2 · UniProt Q9RWB4 · UniProt Q9RSW7 · UniProt Q9RY64 · UniProt Q9RXJ7 · UniProt Q9RXK0 · UniProt Q9RXJ1 · UniProt Q9RX88 · UniProt Q9RY65 · UniProt Q9RRG8 · UniProt Q9RXJ4 · UniProt Q9RSL0 · UniProt P49228 · UniProt Q9RSS4 · UniProt Q9RSH2 · UniProt Q9RSW6
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