UniProt Q9RX88
50S ribosomal protein L25 (Q9RX88)
50S ribosomal protein L25 (UniProt Q9RX88): 49 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 3 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9RX88
- Protein
- 50S ribosomal protein L25
- Experimental structures
- 49
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 3 · 3 records with a druggable one
Structures
50 records of Q9RX88 in the MolNFT archive: 49 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1NJM | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed… | x-ray diffraction | T | — | — |
| 1NJM | The crystal structure of the 50S large ribosomal subunit from deinococcus radiodurans complexed… | x-ray diffraction | T | — | — |
| 1NJP | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed… | x-ray diffraction | T | — | — |
| 1NJP | The crystal structure of the 50S large ribosomal subunit from deinococcus radiodurans complexed… | x-ray diffraction | T | — | — |
| 1NKW | Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans | x-ray diffraction | T | — | — |
| 1NKW | Crystal structure of the large ribosomal subunit from deinococcus radiodurans | x-ray diffraction | T | — | — |
| 1NWX | Complex of the large ribosomal subunit from deinococcus radiodurans with abt-773 | x-ray diffraction | T | — | — |
| 1NWX | Complex of the large ribosomal subunit from deinococcus radiodurans with abt-773 | x-ray diffraction | T | — | — |
| 1NWY | Complex of the large ribosomal subunit from deinococcus radiodurans with azithromycin | x-ray diffraction | T | — | — |
| 1NWY | Complex of the large ribosomal subunit from deinococcus radiodurans with azithromycin | x-ray diffraction | T | — | — |
| 1SM1 | Complex of the large ribosomal subunit from deinococcus radiodurans with quinupristin and… | x-ray diffraction | T | — | — |
| 1SM1 | Complex of the large ribosomal subunit from deinococcus radiodurans with quinupristin and… | x-ray diffraction | T | — | — |
| 1XBP | Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit… | x-ray diffraction | T | — | — |
| 1XBP | Inhibition of peptide bond formation by pleuromutilins: the structure of the 50S ribosomal subunit… | x-ray diffraction | T | — | — |
| 2ZJP | Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans | x-ray diffraction | S | — | — |
| 2ZJP | Thiopeptide antibiotic nosiheptide bound to the large ribosomal subunit of deinococcus radiodurans | x-ray diffraction | S | — | — |
| 2ZJQ | Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit | x-ray diffraction | S | — | — |
| 2ZJQ | Interaction of L7 with L11 induced by microccocin binding to the deinococcus radiodurans 50S subunit | x-ray diffraction | S | — | — |
| 2ZJR | Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans | x-ray diffraction | S | — | — |
| 2ZJR | Refined native structure of the large ribosomal subunit (50S) from deinococcus radiodurans | x-ray diffraction | S | — | — |
| 3CF5 | Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans | x-ray diffraction | S | — | — |
| 3CF5 | Thiopeptide antibiotic thiostrepton bound to the large ribosomal subunit of deinococcus radiodurans | x-ray diffraction | S | — | — |
| 3DLL | The oxazolidi antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA… | x-ray diffraction | S | — | — |
| 3DLL | The oxazolidinone antibiotics perturb the ribosomal peptidyl- transferase center and effect tRNA… | x-ray diffraction | S | — | — |
| 3PIO | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the… | x-ray diffraction | S | — | — |
| 3PIO | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the… | x-ray diffraction | S | — | — |
| 3PIP | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the… | x-ray diffraction | S | — | — |
| 3PIP | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the… | x-ray diffraction | S | — | — |
| 4IO9 | Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans | x-ray diffraction | S | — | — |
| 4IO9 | Crystal structure of compound 4D bound to large ribosomal subunit (50S) from deinococcus radiodurans | x-ray diffraction | S | — | — |
| 4IOA | Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans | x-ray diffraction | S | — | — |
| 4IOA | Crystal structure of compound 4E bound to large ribosomal subunit (50S) from deinococcus radiodurans | x-ray diffraction | S | — | — |
| 4IOC | Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans | x-ray diffraction | S | — | — |
| 4IOC | Crystal structure of compound 4F bound to large ribosomal subunit (50S) from deinococcus radiodurans | x-ray diffraction | S | — | — |
| 4U67 | Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a… | x-ray diffraction | S | — | — |
| 4U67 | Crystal structure of the large ribosomal subunit (50S) of deinococcus radiodurans containing a… | x-ray diffraction | S | — | — |
| 4WFN | Crystal structure of the large ribosomal subunit (50S) of deinococcus radiodurans containing a… | x-ray diffraction | S | — | — |
| 5DM6 | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans | x-ray diffraction | S | — | 1 (best 0.87) |
| 5DM6 | Crystal structure of the 50S ribosomal subunit from deinococcus radiodurans | x-ray diffraction | S | — | — |
| 5DM7 | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with… | x-ray diffraction | S | — | — |
| 5DM7 | Crystal structure of the 50S ribosomal subunit from deinococcus radiodurans in complex with… | x-ray diffraction | S | — | — |
| 5JVG | The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycin | x-ray diffraction | S | — | — |
| 5JVG | The large ribosomal subunit from deinococcus radiodurans in complex with avilamycin | x-ray diffraction | S | — | — |
| 5JVH | The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with… | x-ray diffraction | S | 6O1 | 1 (best 0.87) |
| 5JVH | The crystal structure large ribosomal subunit (50S) of deinococcus radiodurans in complex with… | x-ray diffraction | S | 6O1 | 1 (best 0.87) |
| 7A0R | 50S Deinococcus radiodurans ribosome bounded with mycinamicin I | x-ray diffraction | S | — | — |
| 7A0R | 50S deinococcus radiodurans ribosome bounded with mycinamicin I | x-ray diffraction | S | — | — |
| 7A0S | 50S deinococcus radiodurans ribosome bounded with mycinamicin I | x-ray diffraction | S | — | — |
| 7A18 | 50S deinococcus radiodurans ribosome bounded with mycinamicin IV | x-ray diffraction | S | — | — |
| Q9RX88 | AlphaFold monomer V2.0 prediction for 50S ribosomal protein L25 (Q9RX88) | predicted | A | — | — |
Ligands
- 6O1 · Evernimicin · in 2 records
Experiment against prediction
- 5DM6 chain S against the predicted model Q9RX88: TM-score 0.95, RMSD 1.03 Å
- 5DM6 chain S against the predicted model Q9RX88: TM-score 0.95, RMSD 1.03 Å
- 4IOA chain S against the predicted model Q9RX88: TM-score 0.95, RMSD 1.11 Å
- 4IOA chain S against the predicted model Q9RX88: TM-score 0.95, RMSD 1.11 Å
- 5DM7 chain S against the predicted model Q9RX88: TM-score 0.95, RMSD 1.08 Å
- 5DM7 chain S against the predicted model Q9RX88: TM-score 0.95, RMSD 1.08 Å
- 4IO9 chain S against the predicted model Q9RX88: TM-score 0.95, RMSD 1.11 Å
- 4IO9 chain S against the predicted model Q9RX88: TM-score 0.95, RMSD 1.11 Å
- 7A0R chain S against the predicted model Q9RX88: TM-score 0.95, RMSD 1.14 Å
- 7A0R chain S against the predicted model Q9RX88: TM-score 0.95, RMSD 1.14 Å
Elsewhere
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