MolNFT v1 · #172333 · protein + DNA
Cryo-EM structure of S.CEREVISIAE cohesin-SCC2-DNA complex
6ZZ6: “Cryo-EM structure of S.CEREVISIAE cohesin-SCC2-DNA complex”. Electron microscopy, 2 ligands (ATP, MG). MolNFT v1 #172333 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ZZ6
- Type
- protein + DNA
- Length
- 1,984 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P32908, P47037, Q12158, Q04002
- Ligands
- ATP, MG
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 360 | — | P32908 |
| B | — | protein | 423 | — | P47037 |
| C | — | protein | 83 | — | Q12158 |
| D | — | protein | 1050 | — | Q04002 |
| F | — | dna | 34 | — | — |
| G | — | dna | 34 | — | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZZ6 · Cryo-EM structure of S.cerevisiae cohesin-Scc2-DNA complex · the same entry in another collection · chain G against G, TM-score 1.00
- P32908 · AlphaFold monomer V2.0 prediction for structural maintenance of chromosomes protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q04002 · AlphaFold monomer V2.0 prediction for sister chromatid cohesion protein 2 (Q04002) · a predicted model of the same protein · chain D against A, TM-score 0.93
- P47037 · AlphaFold monomer V2.0 prediction for structural maintenance of chromosomes protein 3… · a predicted model of the same protein · chain B against A, TM-score 0.83
- Q12158 · AlphaFold monomer V2.0 prediction for sister chromatid cohesion protein 1 (Q12158) · a predicted model of the same protein · chain C against A, TM-score 0.43
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32908
- Every structure of UniProt P47037
- Every structure of UniProt Q12158
- Every structure of UniProt Q04002
- Elsewhere: RCSB PDB 6ZZ6 · PDBe 6ZZ6 · UniProt P32908 · UniProt P47037 · UniProt Q12158 · UniProt Q04002
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