MolNFT v1 · #170699 · protein
Crystal structure of the natc complex bound to ARL3 peptide and CoA
6YGC: “Crystal structure of the natc complex bound to ARL3 peptide and CoA”. X-ray diffraction, 3 ligands (COA, IOD, CL). MolNFT v1 #170699 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YGC
- Type
- protein
- Length
- 957 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q03503, Q02197, P23059, Q02804
- Ligands
- COA, IOD, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 159 | — | Q03503 |
| B | — | protein | 720 | — | Q02197 |
| C | — | protein | 74 | — | P23059 |
| D | — | protein | 4 | — | Q02804 |
Ligands and binding sites
- COA · Coenzyme A · ligand · chains A, B, D
- IOD · Iodide ion · ion · 8 copies · chains A, B, C
- CL · Chloride ion · ion · 6 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YGC · Crystal structure of the NatC complex bound to Arl3 peptide and CoA · the same entry in another collection · chain C against C, TM-score 1.00
- P23059 · AlphaFold monomer V2.0 prediction for N-alpha-acetyltransferase 38, natc auxiliary… · a predicted model of the same protein · chain C against A, TM-score 0.98
- Q03503 · AlphaFold monomer V2.0 prediction for N-alpha-acetyltransferase 30 (Q03503) · a predicted model of the same protein · chain A against A, TM-score 0.96
- Q02197 · AlphaFold monomer V2.0 prediction for N-alpha-acetyltransferase 35, natc auxiliary… · a predicted model of the same protein · chain B against A, TM-score 0.96
- Q02804 · AlphaFold monomer V2.0 prediction for ADP-ribosylation factor-like protein 3 (Q02804) · a predicted model of the same protein · chain D against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03503
- Every structure of UniProt Q02197
- Every structure of UniProt P23059
- Every structure of UniProt Q02804
- Elsewhere: RCSB PDB 6YGC · PDBe 6YGC · UniProt Q03503 · UniProt Q02197 · UniProt P23059 · UniProt Q02804
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