Research workbench
Crystal structure of the natc complex bound to ARL3 peptide and CoA
Analyse Crystal structure of the natc complex bound to ARL3 peptide and CoA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6YGC
- Type
- protein
- Length
- 957 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q03503, Q02197, P23059, Q02804
- Ligands
- COA, IOD, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 159 | — | Q03503 |
| B | — | protein | 720 | — | Q02197 |
| C | — | protein | 74 | — | P23059 |
| D | — | protein | 4 | — | Q02804 |
Ligands and binding sites
- COA · Coenzyme A · ligand · chains A, B, D
- IOD · Iodide ion · ion · 8 copies · chains A, B, C
- CL · Chloride ion · ion · 6 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YGC · Crystal structure of the NatC complex bound to Arl3 peptide and CoA · the same entry in another collection · chain C against C, TM-score 1.00
- P23059 · AlphaFold monomer V2.0 prediction for N-alpha-acetyltransferase 38, natc auxiliary… · a predicted model of the same protein · chain C against A, TM-score 0.98
- Q03503 · AlphaFold monomer V2.0 prediction for N-alpha-acetyltransferase 30 (Q03503) · a predicted model of the same protein · chain A against A, TM-score 0.96
- Q02197 · AlphaFold monomer V2.0 prediction for N-alpha-acetyltransferase 35, natc auxiliary… · a predicted model of the same protein · chain B against A, TM-score 0.96
- Q02804 · AlphaFold monomer V2.0 prediction for ADP-ribosylation factor-like protein 3 (Q02804) · a predicted model of the same protein · chain D against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03503
- Every structure of UniProt Q02197
- Every structure of UniProt P23059
- Every structure of UniProt Q02804
- Elsewhere: RCSB PDB 6YGC · PDBe 6YGC · UniProt Q03503 · UniProt Q02197 · UniProt P23059 · UniProt Q02804
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