MolNFT v1 · #170480 · protein
Structure of baltic herring (clupea harengus) phosphoglucomutase 5 (PGM5) with bound glucose-1-phosphate
6Y8Y: “Structure of baltic herring (clupea harengus) phosphoglucomutase 5 (PGM5) with bound glucose-1-phosphate”. X-ray diffraction, 4 ligands (G1P, NA, NI). MolNFT v1 #170480 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Y8Y
- Type
- protein
- Length
- 572 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- G1P, NA, NI, CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 572 | — | — |
Ligands and binding sites
- G1P · 1-O-phosphono-alpha-D-glucopyranose · ligand · chains A
- NA · Sodium ion · metal · 5 copies · chains A
- NI · Nickel (II) ion · metal · chains A
- CA · Calcium ion · metal · chains A
- GOL · Glycerol · additive · 6 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Y8Y · Structure of Baltic Herring (Clupea Harengus) Phosphoglucomutase 5 (PGM5) with bound… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6Y8Y · PDBe 6Y8Y
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