MolNFT v1 · #169833 · protein

Structure of SUMO1-ML00752641 adduct bound to sae

6XOI: “Structure of SUMO1-ML00752641 adduct bound to sae”. X-ray diffraction, 3 ligands (VBA, ZN, SO4). MolNFT v1 #169833 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6XOI
Type: protein
Length: 755 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9UBE0, Q9UBT2, P63165
Ligands: VBA, ZN, SO4

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	311	—	Q9UBE0
B	—	protein	403	—	Q9UBT2
C	—	protein	41	—	P63165

Ligands and binding sites

VBA · [(1R,2R,3S,4R)-4-{[5-(1-benzyl-1H-pyrazole-3-carbonyl) pyrimidin-4-yl]amino}-2,3-dihydroxycyclopentyl]methyl sulfamate · ligand · chains B, C
ZN · Zinc ion · metal · chains B
SO4 · Sulfate ion · ion · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6XOI · Structure of SUMO1-ML00752641 adduct bound to SAE · the same entry in another collection · chain A against A, TM-score 1.00
Q9UBT2 · AlphaFold monomer V2.0 prediction for sumo-activating enzyme subunit 2 (Q9UBT2) · a predicted model of the same protein · chain B against A, TM-score 0.99
Q9UBE0 · AlphaFold monomer V2.0 prediction for sumo-activating enzyme subunit 1 (Q9UBE0) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UBE0
Every structure of UniProt Q9UBT2
Every structure of UniProt P63165
Elsewhere: RCSB PDB 6XOI · PDBe 6XOI · UniProt Q9UBE0 · UniProt Q9UBT2 · UniProt P63165

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