MolNFT v1 · #168549 · protein
Structure of the saccharomyces cerevisiae polymerase epsilon holoenzyme
6WJV: “Structure of the saccharomyces cerevisiae polymerase epsilon holoenzyme”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #168549 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6WJV
- Type
- protein
- Length
- 2,567 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P21951, P24482, P27344, Q04603
- Ligands
- ZN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1951 | — | P21951 |
| 2 | — | protein | 424 | — | P24482 |
| 3 | — | protein | 85 | — | P27344 |
| 4 | — | protein | 107 | — | Q04603 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6WJV · Structure of the Saccharomyces cerevisiae polymerase epsilon holoenzyme · the same entry in another collection · chain 4 against 4, TM-score 1.00
- P24482 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon subunit B (P24482) · a predicted model of the same protein · chain 2 against A, TM-score 0.94
- P27344 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon subunit C (P27344) · a predicted model of the same protein · chain 3 against A, TM-score 0.83
- Q04603 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon subunit D (Q04603) · a predicted model of the same protein · chain 4 against A, TM-score 0.78
- P21951 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon catalytic subunit a (P21951) · a predicted model of the same protein · chain A against A, TM-score 0.55
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21951
- Every structure of UniProt P24482
- Every structure of UniProt P27344
- Every structure of UniProt Q04603
- Elsewhere: RCSB PDB 6WJV · PDBe 6WJV · UniProt P21951 · UniProt P24482 · UniProt P27344 · UniProt Q04603
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