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Structure of the saccharomyces cerevisiae polymerase epsilon holoenzyme

Analyse Structure of the saccharomyces cerevisiae polymerase epsilon holoenzyme in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6WJV
Type
protein
Length
2,567 residues
Chains
4
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P21951, P24482, P27344, Q04603
Ligands
ZN

Structure

electron microscopy · 4 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein1951—P21951
2—protein424—P24482
3—protein85—P27344
4—protein107—Q04603

Ligands and binding sites

  • ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6WJV · Structure of the Saccharomyces cerevisiae polymerase epsilon holoenzyme · the same entry in another collection · chain 4 against 4, TM-score 1.00
  • P24482 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon subunit B (P24482) · a predicted model of the same protein · chain 2 against A, TM-score 0.94
  • P27344 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon subunit C (P27344) · a predicted model of the same protein · chain 3 against A, TM-score 0.83
  • Q04603 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon subunit D (Q04603) · a predicted model of the same protein · chain 4 against A, TM-score 0.78
  • P21951 · AlphaFold monomer V2.0 prediction for DNA polymerase epsilon catalytic subunit a (P21951) · a predicted model of the same protein · chain A against A, TM-score 0.55

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