MolNFT v1 · #168220 · protein
Single-particle cryo-EM structure of arabinofuranosyltransferase aftd from mycobacteria
6W98: “Single-particle cryo-EM structure of arabinofuranosyltransferase aftd from mycobacteria”. Electron microscopy, 3 ligands (6OU, PNS, CA). MolNFT v1 #168220 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6W98
- Type
- protein
- Length
- 1,389 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1N1NKH9, P0A6A8
- Ligands
- 6OU, PNS, CA
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1312 | — | A0A1N1NKH9 |
| B | — | protein | 77 | — | P0A6A8 |
Ligands and binding sites
- 6OU · [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate · ligand · chains A
- PNS · 4'-phosphopantetheine · ligand · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6W98 · Single-Particle Cryo-EM Structure of Arabinofuranosyltransferase AftD from Mycobacteria · the same entry in another collection · chain A against A, TM-score 1.00
- P0A6A8 · AlphaFold monomer V2.0 prediction for acyl carrier protein (P0A6A8) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1N1NKH9
- Every structure of UniProt P0A6A8
- Elsewhere: RCSB PDB 6W98 · PDBe 6W98 · UniProt A0A1N1NKH9 · UniProt P0A6A8
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