MolNFT v1 · #168084 · protein
Holocomplex of E. COLI class ia ribonucleotide reductase with GDP and ttp
6W4X: “Holocomplex of E. COLI class ia ribonucleotide reductase with GDP and ttp”. Electron microscopy, 4 ligands (TTP, FEO, GDP). MolNFT v1 #168084 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6W4X
- Type
- protein
- Length
- 2,190 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00452, P69924
- Ligands
- TTP, FEO, GDP, MG
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 736 | — | P00452 |
| B | — | protein | 738 | — | P00452 |
| C | — | protein | 375 | — | P69924 |
| D | — | protein | 341 | — | P69924 |
Ligands and binding sites
- TTP · Thymidine-5'-triphosphate · ligand · 2 copies · chains A, B
- FEO · Mu-oxo-diiron · ligand · 2 copies · chains C, D
- GDP · Guanosine-5'-diphosphate · ligand · chains B, C
- MG · Magnesium ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6W4X · Holocomplex of E. coli class Ia ribonucleotide reductase with GDP and TTP · the same entry in another collection · chain A against A, TM-score 1.00
- P00452 · AlphaFold monomer V2.0 prediction for ribonucleoside-diphosphate reductase 1 subunit… · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00452
- Every structure of UniProt P69924
- Elsewhere: RCSB PDB 6W4X · PDBe 6W4X · UniProt P00452 · UniProt P69924
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