MolNFT v1 · #167167 · protein
Crystal structure of E.COLI rpph-dapf in complex with GTP, MG2+ and F-
6VCM: “Crystal structure of E.COLI rpph-dapf in complex with GTP, MG2+ and F-”. X-ray diffraction, 4 ligands (GTP, MG, CL). MolNFT v1 #167167 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VCM
- Type
- protein
- Length
- 435 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A6K1, P0A776
- Ligands
- GTP, MG, CL, F
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 275 | — | P0A6K1 |
| B | — | protein | 160 | — | P0A776 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · chains B
- MG · Magnesium ion · metal · 4 copies · chains B
- CL · Chloride ion · ion · chains B
- F · Fluoride ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VCM · Crystal structure of E.coli RppH-DapF in complex with GTP, Mg2+ and F- · the same entry in another collection · chain A against A, TM-score 1.00
- P0A776 · AlphaFold monomer V2.0 prediction for RNA pyrophosphohydrolase (P0A776) · a predicted model of the same protein · chain B against A, TM-score 0.98
- P0A6K1 · AlphaFold monomer V2.0 prediction for diaminopimelate epimerase (P0A6K1) · a predicted model of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6K1
- Every structure of UniProt P0A776
- Elsewhere: RCSB PDB 6VCM · PDBe 6VCM · UniProt P0A6K1 · UniProt P0A776
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.