UniProt P0A6K1
Diaminopimelate epimerase (P0A6K1)
Diaminopimelate epimerase (UniProt P0A6K1), EC 5.1.1.7: 16 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 17 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P0A6K1
- Protein
- Diaminopimelate epimerase
- EC
- 5.1.1.7
- Experimental structures
- 16
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 17 · 6 records with a druggable one
Structures
17 records of P0A6K1 in the MolNFT archive: 16 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4IJZ | Crystal structure of diaminopimelate epimerase from Escherichia coli | x-ray diffraction | A, B | — | — |
| 4IJZ | Crystal structure of diaminopimelate epimerase from escherichia COLI | x-ray diffraction | A, B | — | — |
| 4IK0 | Crystal structure of diaminopimelate epimerase Y268A mutant from Escherichia coli | x-ray diffraction | A, B | — | — |
| 4IK0 | Crystal structure of diaminopimelate epimerase Y268A mutant from escherichia COLI | x-ray diffraction | A, B | — | — |
| 5YGU | Crystal structure of Escherichia coli (strain K12) mRNA Decapping Complex RppH-DapF | x-ray diffraction | A | IOD | 5 (best 0.65) |
| 5YGU | Crystal structure of escherichia COLI (strain K12) mRNA decapping complex rpph-dapf | x-ray diffraction | A | IOD | — |
| 6D1Q | Crystal structure of E. coli RppH-DapF complex, monomer | x-ray diffraction | A | CL | — |
| 6D1Q | Crystal structure of E. COLI rpph-dapf complex, monomer | x-ray diffraction | A | CL | — |
| 6D1V | Crystal structure of E. coli RppH-DapF complex, monomer bound to RNA | x-ray diffraction | A | CL | 2 (best 0.57) |
| 6D1V | Crystal structure of E. COLI rpph-dapf complex, monomer bound to RNA | x-ray diffraction | A | CL | — |
| 6VCK | Crystal structure of E.coli RppH-DapF in complex with GDP, Mg2+ and F- | x-ray diffraction | A | — | 2 (best 0.58) |
| 6VCK | Crystal structure of E.COLI rpph-dapf in complex with GDP, MG2+ and F- | x-ray diffraction | A | — | — |
| 6VCL | Crystal structure of E.coli RppH-DapF in complex with pppGpp, Mg2+ and F- | x-ray diffraction | A | CL | 2 (best 0.52) |
| 6VCL | Crystal structure of E.COLI rpph-dapf in complex with pppgpp, MG2+ and F- | x-ray diffraction | A | CL | 2 (best 0.52) |
| 6VCM | Crystal structure of E.coli RppH-DapF in complex with GTP, Mg2+ and F- | x-ray diffraction | A | — | 4 (best 0.56) |
| 6VCM | Crystal structure of E.COLI rpph-dapf in complex with GTP, MG2+ and F- | x-ray diffraction | A | — | — |
| P0A6K1 | AlphaFold monomer V2.0 prediction for diaminopimelate epimerase (P0A6K1) | predicted | A | — | — |
Ligands
Experiment against prediction
- 5YGU chain A against the predicted model P0A6K1: TM-score 0.99, RMSD 0.77 Å
- 5YGU chain A against the predicted model P0A6K1: TM-score 0.99, RMSD 0.77 Å
- 4IK0 chain B against the predicted model P0A6K1: TM-score 0.98, RMSD 0.83 Å
- 4IK0 chain B against the predicted model P0A6K1: TM-score 0.98, RMSD 0.83 Å
- 4IJZ chain B against the predicted model P0A6K1: TM-score 0.98, RMSD 0.93 Å
- 4IJZ chain B against the predicted model P0A6K1: TM-score 0.98, RMSD 0.93 Å
- 4IJZ chain A against the predicted model P0A6K1: TM-score 0.98, RMSD 0.88 Å
- 4IJZ chain A against the predicted model P0A6K1: TM-score 0.98, RMSD 0.88 Å
- 4IK0 chain A against the predicted model P0A6K1: TM-score 0.98, RMSD 0.97 Å
- 4IK0 chain A against the predicted model P0A6K1: TM-score 0.98, RMSD 0.97 Å
Elsewhere
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