MolNFT v1 · #166730 · protein

Cardiac sodium channel

6UZ3: “Cardiac sodium channel”. Electron microscopy, 4 ligands (6OU, 9Z9, NAG). MolNFT v1 #166730 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6UZ3
Type: protein
Length: 1,126 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P15389, P42212
Ligands: 6OU, 9Z9, NAG, BMA

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	1126	—	P15389, P42212

Ligands and binding sites

6OU · [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate · ligand · 11 copies · chains A
9Z9 · (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en · ligand · 5 copies · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains A
BMA · beta-D-mannopyranose · sugar

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6UZ3 · Cardiac sodium channel · the same entry in another collection · chain A against A, TM-score 1.00
P15389 · AlphaFold monomer V2.0 prediction for sodium channel protein type 5 subunit alpha (P15389) · a predicted model of the same protein · chain A against A, TM-score 0.97
P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain A against A, TM-score 0.09

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P15389
Every structure of UniProt P42212
Elsewhere: RCSB PDB 6UZ3 · PDBe 6UZ3 · UniProt P15389 · UniProt P42212

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