MolNFT v1 · #162001 · protein
Hsckk (human CAMSAP1) decorated 14PF taxol-GDP microtubule
6QVJ: “Hsckk (human CAMSAP1) decorated 14PF taxol-GDP microtubule”. Electron microscopy, 4 ligands (GTP, GDP, TA1). MolNFT v1 #162001 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QVJ
- Type
- protein
- Length
- 1,834 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5T5Y3, P68363, P07437
- Ligands
- GTP, GDP, TA1, MG
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| I | — | protein | 110 | — | Q5T5Y3 |
| O, X | — | protein | 432 | — | P68363 |
| S, U | — | protein | 430 | — | P07437 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 2 copies · chains O, S, X, U
- GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains S, U
- TA1 · Taxol · ligand · 2 copies · chains S, U
- MG · Magnesium ion · metal · 2 copies · chains O, X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6QVJ · HsCKK (human CAMSAP1) decorated 14pf taxol-GDP microtubule · the same entry in another collection · chain U against U, TM-score 1.00
- P68363 · AlphaFold monomer V2.0 prediction for tubulin alpha-1B chain (P68363) · a predicted model of the same protein · chain O against A, TM-score 0.98
- P07437 · AlphaFold monomer V2.0 prediction for tubulin beta chain (P07437) · a predicted model of the same protein · chain S against A, TM-score 0.96
- Q5T5Y3 · AlphaFold monomer V2.0 prediction for calmodulin-regulated spectrin- associated protein 1… · a predicted model of the same protein · chain I against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5T5Y3
- Every structure of UniProt P68363
- Every structure of UniProt P07437
- Elsewhere: RCSB PDB 6QVJ · PDBe 6QVJ · UniProt Q5T5Y3 · UniProt P68363 · UniProt P07437
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