MolNFT v1 · #161384 · protein + RNA
Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer
6QCX: “Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer”. X-ray diffraction, 3 ligands (POP, MG, PO4). MolNFT v1 #161384 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QCX
- Type
- protein + RNA
- Length
- 2,249 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5V8Z9, Q5V8Y6, Q5V8X3
- Ligands
- POP, MG, PO4
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 718 | — | Q5V8Z9 |
| B | — | protein | 747 | — | Q5V8Y6 |
| C | — | protein | 733 | — | Q5V8X3 |
| M | — | rna | 16 | — | — |
| R | — | rna | 21 | — | — |
| V | — | rna | 14 | — | — |
Ligands and binding sites
- POP · Pyrophosphate 2- · ligand · chains B, M
- MG · Magnesium ion · metal · chains B, M
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6QCX · Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5V8Z9
- Every structure of UniProt Q5V8Y6
- Every structure of UniProt Q5V8X3
- Elsewhere: RCSB PDB 6QCX · PDBe 6QCX · UniProt Q5V8Z9 · UniProt Q5V8Y6 · UniProt Q5V8X3
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