MolNFT v1 · #160843 · protein

Cytochrome C oxidase delta 16

6PW1: “Cytochrome C oxidase delta 16”. X-ray diffraction, 8 ligands (TRD, HEA, HTH). MolNFT v1 #160843 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6PW1
Type: protein
Length: 1,579 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q3J5A7, Q3J5G0
Ligands: TRD, HEA, HTH, GLC, CU, CD, MG, CA

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	534	—	Q3J5A7
B, D	—	protein	256	—	Q3J5G0
C	—	protein	533	—	Q3J5A7

Ligands and binding sites

TRD · Tridecane · ligand · 14 copies · chains A, B, C, D
HEA · Heme-A · ligand · 4 copies · chains A, B, C, D
HTH · (2S,3R)-heptane-1,2,3-triol · ligand · 2 copies · chains A, B
GLC · alpha-D-glucopyranose · sugar · 4 copies · chains B, D
CU · Copper (II) ion · metal · 6 copies · chains A, B, C, D
CD · Cadmium ion · metal · 4 copies · chains B, D
MG · Magnesium ion · metal · 2 copies · chains A, B, C, D
CA · Calcium ion · metal · 2 copies · chains A, C
DMU · Decyl-beta-D-maltopyranoside · additive · 6 copies · chains A, B, C
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6PW1 · Cytochrome c Oxidase delta 16 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q3J5A7
Every structure of UniProt Q3J5G0
Elsewhere: RCSB PDB 6PW1 · PDBe 6PW1 · UniProt Q3J5A7 · UniProt Q3J5G0

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