MolNFT v1 · #160677 · protein
Photosynthetic reaction center from rhodopseudomonas viridis (dg- 420314 (triazine) complex)
6PRC: “Photosynthetic reaction center from rhodopseudomonas viridis (dg- 420314 (triazine) complex)”. X-ray diffraction, 8 ligands (HEM, BCB, BPB). MolNFT v1 #160677 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PRC
- Type
- protein
- Length
- 1,186 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P07173, P06009, P06010, P06008
- Ligands
- HEM, BCB, BPB, CEB, MQ7, NS5, FE2, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 332 | — | P07173 |
| L | — | protein | 273 | — | P06009 |
| M | — | protein | 323 | — | P06010 |
| H | — | protein | 258 | — | P06008 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains C, L, M
- BCB · Bacteriochlorophyll B · ligand · 4 copies · chains L, M
- BPB · Bacteriopheophytin B · ligand · 2 copies · chains L, M
- CEB · 2-chloro-4-ethylamino-6-(S(-)-2'-cyano-4-butylamino)-1, 3,5-triazine · ligand · chains L
- MQ7 · Menaquinone-7 · ligand · chains L, M
- NS5 · 15-cis-1,2-dihydroneurosporene · ligand · chains M
- FE2 · Fe (II) ion · metal · chains L, M
- SO4 · Sulfate ion · ion · 4 copies · chains L, M, H
- LDA · Lauryl dimethylamine-N-oxide · additive · 6 copies · chains L, M, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PRC · Photosynthetic reaction center from rhodopseudomonas viridis (dg-420314 (triazine)… · the same entry in another collection · chain H against H, TM-score 1.00
- P07173 · AlphaFold monomer V2.0 prediction for photosynthetic reaction center cytochrome C subunit… · a predicted model of the same protein · chain C against A, TM-score 1.00
- P06009 · AlphaFold monomer V2.0 prediction for reaction center protein L chain (P06009) · a predicted model of the same protein · chain L against A, TM-score 0.99
- P06010 · AlphaFold monomer V2.0 prediction for reaction center protein M chain (P06010) · a predicted model of the same protein · chain M against A, TM-score 0.97
- P06008 · AlphaFold monomer V2.0 prediction for reaction center protein H chain (P06008) · a predicted model of the same protein · chain H against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07173
- Every structure of UniProt P06009
- Every structure of UniProt P06010
- Every structure of UniProt P06008
- Elsewhere: RCSB PDB 6PRC · PDBe 6PRC · UniProt P07173 · UniProt P06009 · UniProt P06010 · UniProt P06008
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