MolNFT v1 · #335521 · protein
AlphaFold monomer V2.0 prediction for reaction center protein L chain (P06009)
P06009: “AlphaFold monomer V2.0 prediction for reaction center protein L chain (P06009)”. 5 pockets (best druggability 0.50). MolNFT v1 #335521 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P06009
- Type
- protein
- Length
- 274 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
- Molecule
- Reaction center protein L chain
- UniProt
- P06009
- Pockets
- 5 · best druggability 0.50
Structure
1 distinct chain · 64% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Reaction center protein L chain | protein | 274 | 64% helix, 3% strand | P06009 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.50 | 0.81 | 20 | empty |
| 2 | 198 | 0.47 | 0.74 | 28 | empty |
| 3 | 74 | 0.38 | 0.78 | 19 | empty |
| 4 | 69 | 0.36 | 0.77 | 10 | empty |
| 5 | 72 | 0.32 | 0.74 | 13 | empty |
Compared structures
- 1DXR · Photosynthetic reaction center from rhodopseudomonas viridis - his L168 phe mutant… · an experimental structure of the same protein · chain A against L, TM-score 0.99
- 1DXR · Photosynthetic reaction center from Rhodopseudomonas viridis - His L168 Phe mutant… · an experimental structure of the same protein · chain A against L, TM-score 0.99
- 2JBL · Photosynthetic reaction center from blastochloris viridis · an experimental structure of the same protein · chain A against L, TM-score 0.99
- 2JBL · Photosynthetic reaction center from blastochloris viridis · an experimental structure of the same protein · chain A against L, TM-score 0.99
- 2WJN · Lipidic sponge phase crystal structure of photosynthetic reaction centre from… · an experimental structure of the same protein · chain A against L, TM-score 0.99
- 2WJN · Lipidic sponge phase crystal structure of photosynthetic reaction centre from… · an experimental structure of the same protein · chain A against L, TM-score 0.99
- 5NJ4 · From macrocrystals to microcrystals: a strategy for membrane protein serial… · an experimental structure of the same protein · chain A against L, TM-score 0.99
- 5NJ4 · From macrocrystals to microcrystals: a strategy for membrane protein serial… · an experimental structure of the same protein · chain A against L, TM-score 0.99
- 2PRC · Photosynthetic reaction center from rhodopseudomonas viridis (ubiquinone-2 complex) · an experimental structure of the same protein · chain A against L, TM-score 0.99
- 2PRC · Photosynthetic reaction center from rhodopseudomonas viridis (ubiquinone-2 complex) · an experimental structure of the same protein · chain A against L, TM-score 0.99
- 4CAS · Serial femtosecond crystallography structure of a photosynthetic reaction center · an experimental structure of the same protein · chain A against B, TM-score 0.99
- 4CAS · Serial femtosecond crystallography structure of a photosynthetic reaction center · an experimental structure of the same protein · chain A against B, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06009
- Elsewhere: UniProt P06009 · AlphaFold DB P06009
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