MolNFT v1 · #160285 · protein
Membrane protein megahertz crystallography at the european xfel, photosystem I at synchrotron to 2.9 a
6PFY: “Membrane protein megahertz crystallography at the european xfel, photosystem I at synchrotron to 2.9 a”. X-ray diffraction, 8 ligands (CLA, BCR, SF4). MolNFT v1 #160285 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PFY
- Type
- protein
- Length
- 6,720 residues
- Chains
- 36
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0A405, P0A407, P0A415, P0A420, P0A423, P0A401, P0A427, P0A429, P0A425, Q8DGB4, P0A403, Q8DKP6
- Ligands
- CLA, BCR, SF4, LHG, PQN, CL0, LMG, CA
Structure
x-ray diffraction · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, G, Y | — | protein | 741 | — | P0A405 |
| B, H, Z | — | protein | 739 | — | P0A407 |
| C, N, a | — | protein | 80 | — | P0A415 |
| D, O, b | — | protein | 138 | — | P0A420 |
| E, P, c | — | protein | 69 | — | P0A423 |
| F, Q, d | — | protein | 141 | — | P0A401 |
| I, R, e | — | protein | 38 | — | P0A427 |
| J, S, f | — | protein | 41 | — | P0A429 |
| K, T, g | — | protein | 46 | — | P0A425 |
| L, U, h | — | protein | 151 | — | Q8DGB4 |
| M, V, i | — | protein | 30 | — | P0A403 |
| W, X, j | — | protein | 26 | — | Q8DKP6 |
Ligands and binding sites
- CLA · Chlorophyll A · ligand · 282 copies · chains A, B, F, J, K, L, Z, i, M, I, h, X, G, H, S, T, Q, V, R, U, W, Y, e, d, f, g, j
- BCR · Beta-carotene · ligand · 66 copies · chains A, K, B, F, J, G, H, Q, S, I, L, U, M, R, h, T, Z, e, V, Y, g, f, d, i
- SF4 · Iron/sulfur cluster · ligand · 9 copies · chains A, B, C, G, H, N, Y, Z, a
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · ligand · 9 copies · chains A, E, B, X, G, P, H, W, Y, c, Z, j
- PQN · Phylloquinone · ligand · 6 copies · chains A, J, B, G, S, H, Y, f, Z
- CL0 · Chlorophyll A isomer · ligand · 3 copies · chains A, B, G, H, Y, Z
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · ligand · 3 copies · chains B, H, Z
- CA · Calcium ion · metal · 3 copies · chains A, L, h, U, Y, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PFY · Membrane Protein Megahertz Crystallography at the European XFEL, Photosystem I at… · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A405
- Every structure of UniProt P0A407
- Every structure of UniProt P0A415
- Every structure of UniProt P0A420
- Every structure of UniProt P0A423
- Every structure of UniProt P0A401
- Every structure of UniProt P0A427
- Every structure of UniProt P0A429
- Every structure of UniProt P0A425
- Every structure of UniProt Q8DGB4
- Every structure of UniProt P0A403
- Every structure of UniProt Q8DKP6
- Elsewhere: RCSB PDB 6PFY · PDBe 6PFY · UniProt P0A405 · UniProt P0A407 · UniProt P0A415 · UniProt P0A420 · UniProt P0A423 · UniProt P0A401 · UniProt P0A427 · UniProt P0A429 · UniProt P0A425 · UniProt Q8DGB4 · UniProt P0A403 · UniProt Q8DKP6
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